Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRC rs1992582 chr4:186340877 T/A 8.66E-7 525 3.53 39.5 39.38 KM Plot
KIRC rs199820 chr20:22323038 G/T 1.45E-5 527 42.27 35.42 12.83 KM Plot
KIRC rs2028696 chr4:186310302 A/G 9.08E-7 525 3.53 38.55 39.38 KM Plot
KIRC rs2028697 chr4:186310191 A/G 9.52E-7 520 3.53 40.63 39.17 KM Plot
KIRC rs2028700 chr4:186346152 C/G 8.66E-7 525 3.53 39.5 39.38 KM Plot
KIRC rs2051539 chr6:25947259 G/C 5.27E-5 523 42.4 30.52 6.8 KM Plot
KIRC rs2073004 chr6:2435178 C/T 3.28E-5 527 12.25 38.53 40 KM Plot
KIRC rs2093438 chr6:165376070 T/C 3.31E-5 519 15.83 44.23 39.38 KM Plot
KIRC rs2094422 chr6:20282383 A/G 9.77E-9 522 9.02 35.77 43.68 KM Plot
KIRC rs2094425 chr6:20287407 G/C 9.0E-9 525 9.02 35.77 43.3 KM Plot
KIRC rs2112799 chr19:56161206 C/T 2.54E-6 518 41.27 37.45 7.4 KM Plot
KIRC rs2146029 chr6:165358363 C/G 1.84E-5 527 17.28 44.23 39.53 KM Plot
KIRC rs2156316 chr21:44269825 G/A 1.42E-7 519 42.2 32.42 7.18 KM Plot
KIRC rs2156319 chr21:44339567 G/A 6.94E-10 514 42.47 33.07 7.18 KM Plot
KIRC rs2163326 chr3:69876683 A/C 5.0E-5 527 38.88 44.1 22.77 KM Plot